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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.5.dev0

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2018-07-01, 00:00 based on data in: /mnt/NAS/NASBIO1/DATA/GAMeR_DB/CLOSTRIDIUM


        General Statistics

        Showing 596 samples.

        loading..

        QUAST

        QUAST is a quality assessment tool for genome assemblies, written by the Center for Algorithmic Biotechnology.

        Assembly Statistics

        Showing 149/149 rows and 12/12 columns.
        Sample NameN50 (Kbp)N75 (Kbp)L50 (K)L75 (K)Largest contig (Kbp)Length (Mbp)MisassembliesMismatches/100kbpIndels/100kbpGenesGenes (Partial)Genome Fraction
        15SBCL1664_scaffold_closed
        2772.0Kbp
        2772.0Kbp
        0.0K
        1.0K
        2772.0Kbp
        2.9Mbp
        111.0
        552.44
        30.34
        2353
        53
        89.5%
        15SBCL801_scaffold_closed
        3222.6Kbp
        3222.6Kbp
        0.0K
        1.0K
        3222.6Kbp
        3.2Mbp
        12.0
        1.34
        1.12
        2951
        11
        98.9%
        15SBCL899_scaffold_closed
        3191.4Kbp
        3191.4Kbp
        0.0K
        1.0K
        3191.4Kbp
        3.2Mbp
        97.0
        1445.74
        72.41
        2473
        38
        83.3%
        15SBCL900_scaffold_closed
        3293.1Kbp
        3293.1Kbp
        0.0K
        1.0K
        3293.1Kbp
        3.3Mbp
        93.0
        1400.38
        71.31
        2555
        49
        85.6%
        16SBCL106_scaffold_closed
        1913.8Kbp
        326.4Kbp
        0.0K
        2.0K
        1913.8Kbp
        2.9Mbp
        132.0
        297.95
        19.43
        2398
        116
        92.9%
        16SBCL1078_scaffold_closed
        3292.1Kbp
        3292.1Kbp
        0.0K
        1.0K
        3292.1Kbp
        3.3Mbp
        90.0
        2267.06
        105.71
        2494
        46
        84.8%
        16SBCL1079_scaffold_closed
        3242.2Kbp
        3242.2Kbp
        0.0K
        1.0K
        3242.2Kbp
        3.3Mbp
        52.0
        1034.47
        46.29
        2705
        30
        86.8%
        16SBCL107_scaffold_closed
        2185.3Kbp
        475.4Kbp
        0.0K
        2.0K
        2185.3Kbp
        2.9Mbp
        98.0
        487.79
        29.31
        2407
        68
        91.4%
        16SBCL1080_scaffold_closed
        3296.8Kbp
        3296.8Kbp
        0.0K
        1.0K
        3296.8Kbp
        3.3Mbp
        56.0
        1048.24
        46.59
        2721
        29
        87.0%
        16SBCL1081_scaffold_closed
        3292.0Kbp
        3292.0Kbp
        0.0K
        1.0K
        3292.0Kbp
        3.3Mbp
        93.0
        2329.33
        107.95
        2494
        46
        84.8%
        16SBCL1082_scaffold_closed
        3293.7Kbp
        3293.7Kbp
        0.0K
        1.0K
        3293.7Kbp
        3.3Mbp
        56.0
        1044.42
        46.98
        2717
        29
        87.0%
        16SBCL1083_scaffold_closed
        3208.4Kbp
        3208.4Kbp
        0.0K
        1.0K
        3208.4Kbp
        3.2Mbp
        85.0
        1145.67
        52.23
        2583
        58
        87.4%
        16SBCL109_scaffold_closed
        2834.1Kbp
        2834.1Kbp
        0.0K
        1.0K
        2834.1Kbp
        3.0Mbp
        123.0
        438.66
        24.03
        2391
        78
        91.3%
        16SBCL110_scaffold_closed
        2610.2Kbp
        2610.2Kbp
        0.0K
        1.0K
        2610.2Kbp
        2.8Mbp
        126.0
        999.83
        52.14
        2305
        58
        88.0%
        16SBCL111_scaffold_closed
        3114.3Kbp
        3114.3Kbp
        0.0K
        1.0K
        3114.3Kbp
        3.2Mbp
        144.0
        1376.64
        66.96
        2445
        131
        85.3%
        16SBCL1126_scaffold_closed
        1122.5Kbp
        1122.5Kbp
        0.0K
        2.0K
        1271.4Kbp
        3.0Mbp
        105.0
        452.42
        25.68
        2391
        65
        91.1%
        16SBCL1127_scaffold_closed
        3003.9Kbp
        3003.9Kbp
        0.0K
        1.0K
        3003.9Kbp
        3.0Mbp
        102.0
        454.25
        25.34
        2398
        75
        91.2%
        16SBCL1128_scaffold_closed
        2428.3Kbp
        2428.3Kbp
        0.0K
        1.0K
        2428.3Kbp
        3.0Mbp
        109.0
        444.86
        25.31
        2391
        75
        91.4%
        16SBCL1129_scaffold_closed
        2092.4Kbp
        325.0Kbp
        0.0K
        2.0K
        2092.4Kbp
        3.0Mbp
        118.0
        455.34
        25.91
        2401
        76
        91.4%
        16SBCL1130_scaffold_closed
        2359.5Kbp
        2359.5Kbp
        0.0K
        1.0K
        2359.5Kbp
        3.0Mbp
        133.0
        454.92
        25.93
        2397
        79
        91.4%
        16SBCL113_scaffold_closed
        2872.5Kbp
        2872.5Kbp
        0.0K
        1.0K
        2872.5Kbp
        2.9Mbp
        91.0
        385.14
        22.55
        2422
        64
        92.3%
        16SBCL1141_scaffold_closed
        3154.4Kbp
        3154.4Kbp
        0.0K
        1.0K
        3154.4Kbp
        3.2Mbp
        73.0
        1156.18
        54.75
        2606
        45
        87.9%
        16SBCL1142_scaffold_closed
        3329.8Kbp
        3329.8Kbp
        0.0K
        1.0K
        3329.8Kbp
        3.3Mbp
        54.0
        827.66
        42.84
        2685
        39
        91.0%
        16SBCL1143_scaffold_closed
        3281.5Kbp
        3281.5Kbp
        0.0K
        1.0K
        3281.5Kbp
        3.4Mbp
        60.0
        771.27
        35.87
        2639
        39
        89.8%
        16SBCL1144_scaffold_closed
        3102.2Kbp
        3102.2Kbp
        0.0K
        1.0K
        3102.2Kbp
        3.2Mbp
        112.0
        1366.52
        65.03
        2491
        63
        84.6%
        16SBCL1344_scaffold_closed
        3236.0Kbp
        3236.0Kbp
        0.0K
        1.0K
        3236.0Kbp
        3.5Mbp
        59.0
        837.88
        39.42
        2709
        35
        91.7%
        16SBCL1431_scaffold_closed
        2910.4Kbp
        2910.4Kbp
        0.0K
        1.0K
        2910.4Kbp
        2.9Mbp
        122.0
        1011.21
        53.61
        2286
        53
        87.7%
        16SBCL1432_scaffold_closed
        2480.1Kbp
        2480.1Kbp
        0.0K
        1.0K
        2480.1Kbp
        2.9Mbp
        123.0
        993.79
        51.98
        2291
        63
        87.8%
        16SBCL1433_scaffold_closed
        2661.5Kbp
        2661.5Kbp
        0.0K
        1.0K
        2661.5Kbp
        2.9Mbp
        127.0
        996.31
        52.59
        2288
        64
        87.7%
        16SBCL1434_scaffold_closed
        2903.7Kbp
        2903.7Kbp
        0.0K
        1.0K
        2903.7Kbp
        2.9Mbp
        130.0
        995.05
        52.56
        2299
        60
        87.8%
        16SBCL1435_scaffold_closed
        2464.9Kbp
        2464.9Kbp
        0.0K
        1.0K
        2464.9Kbp
        2.9Mbp
        137.0
        983.17
        51.39
        2292
        64
        87.8%
        16SBCL1552_scaffold_closed
        2918.4Kbp
        2918.4Kbp
        0.0K
        1.0K
        2918.4Kbp
        3.0Mbp
        91.0
        3076.22
        136.50
        2152
        52
        71.9%
        16SBCL1584_scaffold_closed
        2917.4Kbp
        2917.4Kbp
        0.0K
        1.0K
        2917.4Kbp
        2.9Mbp
        113.0
        448.29
        25.31
        2366
        70
        90.8%
        16SBCL1585_scaffold_closed
        2461.6Kbp
        2461.6Kbp
        0.0K
        1.0K
        2461.6Kbp
        2.9Mbp
        102.0
        452.22
        25.20
        2383
        68
        90.9%
        16SBCL1586_scaffold_closed
        1774.4Kbp
        458.5Kbp
        0.0K
        2.0K
        1774.4Kbp
        2.9Mbp
        97.0
        449.17
        25.89
        2381
        67
        90.8%
        16SBCL1587_scaffold_closed
        2336.2Kbp
        2336.2Kbp
        0.0K
        1.0K
        2336.2Kbp
        2.9Mbp
        99.0
        452.63
        25.88
        2372
        69
        90.8%
        16SBCL1588_scaffold_closed
        2862.4Kbp
        2862.4Kbp
        0.0K
        1.0K
        2862.4Kbp
        2.9Mbp
        118.0
        451.09
        25.36
        2380
        83
        91.1%
        16SBCL1589_scaffold_closed
        3282.4Kbp
        3282.4Kbp
        0.0K
        1.0K
        3282.4Kbp
        3.4Mbp
        65.0
        908.09
        43.52
        2643
        47
        89.5%
        16SBCL1590_scaffold_closed
        3164.4Kbp
        3164.4Kbp
        0.0K
        1.0K
        3164.4Kbp
        3.2Mbp
        88.0
        1230.64
        61.70
        2592
        55
        87.1%
        16SBCL1591_scaffold_closed
        3232.0Kbp
        3232.0Kbp
        0.0K
        1.0K
        3232.0Kbp
        3.4Mbp
        48.0
        459.47
        24.81
        2634
        40
        90.5%
        16SBCL1592_scaffold_closed
        2994.1Kbp
        2994.1Kbp
        0.0K
        1.0K
        2994.1Kbp
        3.0Mbp
        89.0
        3088.33
        136.85
        2159
        48
        72.2%
        16SBCL525_scaffold_closed
        3264.1Kbp
        3264.1Kbp
        0.0K
        1.0K
        3264.1Kbp
        3.4Mbp
        76.0
        1203.61
        57.68
        2664
        53
        90.1%
        16SBCL528_scaffold_closed
        2103.7Kbp
        450.6Kbp
        0.0K
        2.0K
        2103.7Kbp
        2.9Mbp
        98.0
        384.90
        22.46
        2441
        73
        92.8%
        16SBCL529_scaffold_closed
        1471.8Kbp
        1175.5Kbp
        0.0K
        2.0K
        1471.8Kbp
        2.9Mbp
        92.0
        384.92
        21.91
        2438
        53
        92.6%
        16SBCL530_scaffold_closed
        2419.5Kbp
        2419.5Kbp
        0.0K
        1.0K
        2419.5Kbp
        2.9Mbp
        98.0
        381.83
        24.09
        2439
        66
        92.8%
        16SBCL531_scaffold_closed
        1657.9Kbp
        285.6Kbp
        0.0K
        3.0K
        1657.9Kbp
        2.9Mbp
        86.0
        378.71
        22.74
        2442
        59
        92.7%
        16SBCL532_scaffold_closed
        2259.8Kbp
        2259.8Kbp
        0.0K
        1.0K
        2259.8Kbp
        2.9Mbp
        93.0
        381.92
        22.64
        2439
        71
        92.9%
        16SBCL537_scaffold_closed
        3176.5Kbp
        3176.5Kbp
        0.0K
        1.0K
        3176.5Kbp
        3.2Mbp
        63.0
        1156.58
        54.94
        2667
        42
        89.8%
        16SBCL538_scaffold_closed
        3038.0Kbp
        3038.0Kbp
        0.0K
        1.0K
        3038.0Kbp
        3.1Mbp
        90.0
        3063.10
        136.11
        2166
        43
        71.4%
        16SBCL563_scaffold_closed
        2731.0Kbp
        2731.0Kbp
        0.0K
        1.0K
        2731.0Kbp
        3.0Mbp
        72.0
        167.40
        11.24
        2498
        64
        94.9%
        16SBCL564_scaffold_closed
        2448.6Kbp
        2448.6Kbp
        0.0K
        1.0K
        2448.6Kbp
        3.0Mbp
        55.0
        166.96
        11.28
        2502
        52
        94.9%
        16SBCL565_scaffold_closed
        2484.6Kbp
        2484.6Kbp
        0.0K
        1.0K
        2484.6Kbp
        2.9Mbp
        65.0
        165.04
        11.43
        2503
        45
        94.9%
        16SBCL566_scaffold_closed
        2335.3Kbp
        2335.3Kbp
        0.0K
        1.0K
        2335.3Kbp
        3.0Mbp
        68.0
        171.21
        13.41
        2502
        52
        94.9%
        16SBCL567_scaffold_closed
        2576.2Kbp
        2576.2Kbp
        0.0K
        1.0K
        2576.2Kbp
        3.0Mbp
        65.0
        170.01
        11.82
        2501
        58
        94.9%
        16SBCL570_scaffold_closed
        3280.9Kbp
        3280.9Kbp
        0.0K
        1.0K
        3280.9Kbp
        3.4Mbp
        43.0
        866.70
        39.58
        2721
        33
        91.6%
        16SBCL571_scaffold_closed
        4265.8Kbp
        782.3Kbp
        0.0K
        2.0K
        4265.8Kbp
        5.9Mbp
        991.0
        1657.65
        79.01
        1578
        1022
        82.7%
        16SBCL572_scaffold_closed
        5036.6Kbp
        5036.6Kbp
        0.0K
        1.0K
        5036.6Kbp
        5.6Mbp
        1043.0
        1675.90
        83.36
        1635
        1000
        83.7%
        16SBCL575_scaffold_closed
        3293.7Kbp
        3293.7Kbp
        0.0K
        1.0K
        3293.7Kbp
        3.3Mbp
        90.0
        1413.13
        70.93
        2553
        49
        85.6%
        16SBCL576_scaffold_closed
        3203.5Kbp
        3203.5Kbp
        0.0K
        1.0K
        3203.5Kbp
        4.2Mbp
        104.0
        1411.36
        63.10
        2486
        49
        84.4%
        16SBCL577_scaffold_closed
        2603.9Kbp
        2603.9Kbp
        0.0K
        1.0K
        2603.9Kbp
        3.0Mbp
        78.0
        166.59
        12.88
        2494
        54
        94.8%
        16SBCL578_scaffold_closed
        3335.5Kbp
        3335.5Kbp
        0.0K
        1.0K
        3335.5Kbp
        3.4Mbp
        74.0
        1312.24
        61.15
        2657
        39
        89.8%
        16SBCL579_scaffold_closed
        3377.5Kbp
        3377.5Kbp
        0.0K
        1.0K
        3377.5Kbp
        3.5Mbp
        81.0
        1174.27
        54.11
        2671
        53
        90.0%
        16SBCL580_scaffold_closed
        2438.9Kbp
        2438.9Kbp
        0.0K
        1.0K
        2438.9Kbp
        2.9Mbp
        105.0
        453.80
        25.41
        2386
        60
        90.9%
        16SBCL581_scaffold_closed
        2167.5Kbp
        635.4Kbp
        0.0K
        2.0K
        2167.5Kbp
        2.9Mbp
        107.0
        455.73
        26.05
        2381
        67
        90.9%
        16SBCL582_scaffold_closed
        1803.8Kbp
        594.5Kbp
        0.0K
        2.0K
        1803.8Kbp
        2.9Mbp
        106.0
        456.67
        26.73
        2385
        69
        91.0%
        16SBCL583_scaffold_closed
        2885.0Kbp
        2885.0Kbp
        0.0K
        1.0K
        2885.0Kbp
        2.9Mbp
        109.0
        453.85
        25.82
        2385
        64
        91.0%
        16SBCL584_scaffold_closed
        2360.5Kbp
        369.5Kbp
        0.0K
        2.0K
        2360.5Kbp
        3.3Mbp
        187.0
        207.17
        15.28
        2404
        158
        94.9%
        16SBCL585_scaffold_closed
        2901.3Kbp
        2901.3Kbp
        0.0K
        1.0K
        2901.3Kbp
        2.9Mbp
        107.0
        446.13
        24.83
        2372
        70
        91.0%
        16SBCL586_scaffold_closed
        1940.2Kbp
        465.9Kbp
        0.0K
        2.0K
        1940.2Kbp
        2.9Mbp
        100.0
        455.19
        25.92
        2386
        75
        91.1%
        16SBCL587_scaffold_closed
        2676.9Kbp
        2676.9Kbp
        0.0K
        1.0K
        2676.9Kbp
        2.9Mbp
        116.0
        455.77
        26.71
        2383
        62
        91.0%
        16SBCL588_scaffold_closed
        2444.1Kbp
        2444.1Kbp
        0.0K
        1.0K
        2444.1Kbp
        2.9Mbp
        93.0
        449.59
        25.75
        2387
        74
        91.0%
        16SBCL589_scaffold_closed
        2813.8Kbp
        2813.8Kbp
        0.0K
        1.0K
        2813.8Kbp
        2.9Mbp
        108.0
        454.15
        25.72
        2387
        58
        91.0%
        16SBCL590A_scaffold_closed
        1127.4Kbp
        1127.4Kbp
        0.0K
        2.0K
        1305.2Kbp
        2.9Mbp
        95.0
        455.16
        26.15
        2382
        79
        91.1%
        16SBCL590B_scaffold_closed
        2376.4Kbp
        2376.4Kbp
        0.0K
        1.0K
        2376.4Kbp
        2.9Mbp
        98.0
        448.34
        25.64
        2378
        74
        91.0%
        16SBCL591_scaffold_closed
        2794.4Kbp
        2794.4Kbp
        0.0K
        1.0K
        2794.4Kbp
        2.9Mbp
        107.0
        456.81
        25.98
        2379
        56
        90.9%
        16SBCL592A_scaffold_closed
        2859.7Kbp
        2859.7Kbp
        0.0K
        1.0K
        2859.7Kbp
        2.9Mbp
        100.0
        446.98
        24.48
        2377
        70
        90.9%
        16SBCL592B_scaffold_closed
        2898.5Kbp
        2898.5Kbp
        0.0K
        1.0K
        2898.5Kbp
        2.9Mbp
        99.0
        452.35
        25.05
        2374
        70
        90.9%
        16SBCL593A_scaffold_closed
        2916.3Kbp
        2916.3Kbp
        0.0K
        1.0K
        2916.3Kbp
        2.9Mbp
        95.0
        453.62
        25.82
        2384
        58
        90.9%
        16SBCL593B_scaffold_closed
        2648.9Kbp
        2648.9Kbp
        0.0K
        1.0K
        2648.9Kbp
        2.9Mbp
        104.0
        457.42
        25.88
        2380
        76
        90.9%
        16SBCL595_scaffold_closed
        3220.9Kbp
        3220.9Kbp
        0.0K
        1.0K
        3220.9Kbp
        3.3Mbp
        64.0
        1138.71
        54.88
        2661
        39
        90.0%
        16SBCL596A_scaffold_closed
        3304.1Kbp
        3304.1Kbp
        0.0K
        1.0K
        3304.1Kbp
        3.4Mbp
        67.0
        1087.55
        55.26
        2699
        43
        91.1%
        16SBCL596B_scaffold_closed
        3203.9Kbp
        3203.9Kbp
        0.0K
        1.0K
        3203.9Kbp
        3.4Mbp
        65.0
        1105.96
        55.27
        2694
        42
        91.1%
        16SBCL599_scaffold_closed
        1153.6Kbp
        1153.6Kbp
        0.0K
        2.0K
        1193.9Kbp
        2.9Mbp
        109.0
        456.03
        25.98
        2376
        77
        91.1%
        16SBCL600_scaffold_closed
        3261.7Kbp
        3261.7Kbp
        0.0K
        1.0K
        3261.7Kbp
        3.3Mbp
        40.0
        654.97
        33.14
        2732
        33
        92.3%
        16SBCL601_scaffold_closed
        3141.4Kbp
        3141.4Kbp
        0.0K
        1.0K
        3141.4Kbp
        3.2Mbp
        54.0
        839.02
        37.27
        2612
        31
        88.3%
        16SBCL602_scaffold_closed
        3140.0Kbp
        3140.0Kbp
        0.0K
        1.0K
        3140.0Kbp
        3.2Mbp
        55.0
        838.28
        37.15
        2603
        26
        88.3%
        16SBCL603_scaffold_closed
        3211.7Kbp
        3211.7Kbp
        0.0K
        1.0K
        3211.7Kbp
        3.3Mbp
        34.0
        659.77
        32.88
        2729
        36
        92.3%
        16SBCL604_scaffold_closed
        3256.2Kbp
        3256.2Kbp
        0.0K
        1.0K
        3256.2Kbp
        3.3Mbp
        40.0
        644.56
        31.88
        2724
        37
        92.3%
        16SBCL605_scaffold_closed
        2923.9Kbp
        2923.9Kbp
        0.0K
        1.0K
        2923.9Kbp
        2.9Mbp
        104.0
        437.52
        26.10
        2410
        67
        92.0%
        16SBCL606_scaffold_closed
        2784.2Kbp
        2784.2Kbp
        0.0K
        1.0K
        2784.2Kbp
        2.9Mbp
        100.0
        450.83
        26.74
        2409
        65
        91.8%
        16SBCL607_scaffold_closed
        2288.2Kbp
        2288.2Kbp
        0.0K
        1.0K
        2288.2Kbp
        2.9Mbp
        98.0
        446.76
        26.09
        2417
        65
        91.9%
        16SBCL608_scaffold_closed
        2261.0Kbp
        2261.0Kbp
        0.0K
        1.0K
        2261.0Kbp
        2.9Mbp
        91.0
        450.31
        26.80
        2387
        65
        90.8%
        16SBCL609_scaffold_closed
        2912.9Kbp
        2912.9Kbp
        0.0K
        1.0K
        2912.9Kbp
        2.9Mbp
        85.0
        474.02
        27.89
        2400
        70
        91.3%
        16SBCL610_scaffold_closed
        3180.6Kbp
        3180.6Kbp
        0.0K
        1.0K
        3180.6Kbp
        3.3Mbp
        53.0
        745.11
        35.97
        2709
        27
        90.8%
        16SBCL611_scaffold_closed
        3139.0Kbp
        3139.0Kbp
        0.0K
        1.0K
        3139.0Kbp
        3.3Mbp
        49.0
        747.36
        36.88
        2704
        30
        90.9%
        16SBCL615_scaffold_closed
        2633.6Kbp
        2633.6Kbp
        0.0K
        1.0K
        2633.6Kbp
        3.0Mbp
        129.0
        1007.36
        53.94
        2299
        61
        88.2%
        16SBCL616_scaffold_closed
        2784.2Kbp
        2784.2Kbp
        0.0K
        1.0K
        2784.2Kbp
        3.0Mbp
        124.0
        1009.39
        52.36
        2302
        67
        88.3%
        16SBCL617_scaffold_closed
        2860.0Kbp
        2860.0Kbp
        0.0K
        1.0K
        2860.0Kbp
        3.0Mbp
        122.0
        1011.08
        53.16
        2304
        62
        88.3%
        16SBCL618_scaffold_closed
        2870.2Kbp
        2870.2Kbp
        0.0K
        1.0K
        2870.2Kbp
        3.0Mbp
        167.0
        1010.29
        52.31
        2298
        88
        88.8%
        16SBCL620_scaffold_closed
        2883.0Kbp
        2883.0Kbp
        0.0K
        1.0K
        2883.0Kbp
        3.3Mbp
        60.0
        1125.35
        51.53
        2683
        37
        90.9%
        16SBCL621_scaffold_closed
        2649.2Kbp
        2649.2Kbp
        0.0K
        1.0K
        2649.2Kbp
        3.1Mbp
        96.0
        1419.78
        69.07
        2524
        58
        85.9%
        16SBCL624_scaffold_closed
        2827.1Kbp
        2827.1Kbp
        0.0K
        1.0K
        2827.1Kbp
        2.9Mbp
        160.0
        1008.18
        57.35
        2246
        83
        87.0%
        16SBCL625_scaffold_closed
        2905.4Kbp
        2905.4Kbp
        0.0K
        1.0K
        2905.4Kbp
        2.9Mbp
        130.0
        1008.67
        54.97
        2292
        55
        87.8%
        16SBCL627_scaffold_closed
        2905.6Kbp
        2905.6Kbp
        0.0K
        1.0K
        2905.6Kbp
        2.9Mbp
        127.0
        1042.64
        55.94
        2286
        60
        87.7%
        16SBCL628_scaffold_closed
        2907.5Kbp
        2907.5Kbp
        0.0K
        1.0K
        2907.5Kbp
        2.9Mbp
        122.0
        1009.26
        55.29
        2286
        58
        87.8%
        16SBCL629_scaffold_closed
        3225.9Kbp
        3225.9Kbp
        0.0K
        1.0K
        3225.9Kbp
        3.3Mbp
        57.0
        1166.72
        51.37
        2676
        41
        90.8%
        16SBCL631_scaffold_closed
        2796.5Kbp
        2796.5Kbp
        0.0K
        1.0K
        2796.5Kbp
        3.4Mbp
        53.0
        833.23
        40.41
        2710
        36
        91.6%
        16SBCL632_scaffold_closed
        3206.7Kbp
        3206.7Kbp
        0.0K
        1.0K
        3206.7Kbp
        3.3Mbp
        55.0
        1196.19
        53.54
        2683
        38
        90.6%
        16SBCL648_scaffold_closed
        3324.9Kbp
        3324.9Kbp
        0.0K
        1.0K
        3324.9Kbp
        3.5Mbp
        88.0
        1238.25
        59.51
        2602
        62
        87.8%
        16SBCL816_scaffold_closed
        3190.6Kbp
        3190.6Kbp
        0.0K
        1.0K
        3190.6Kbp
        3.5Mbp
        105.0
        1419.98
        70.23
        2486
        60
        84.5%
        16SBCL939_scaffold_closed
        2618.0Kbp
        2618.0Kbp
        0.0K
        1.0K
        2618.0Kbp
        2.9Mbp
        100.0
        383.75
        23.23
        2442
        48
        92.7%
        16SBCL940_scaffold_closed
        2635.1Kbp
        2635.1Kbp
        0.0K
        1.0K
        2635.1Kbp
        2.9Mbp
        91.0
        382.62
        21.95
        2442
        48
        92.6%
        16SBCL941_scaffold_closed
        2287.2Kbp
        2287.2Kbp
        0.0K
        1.0K
        2287.2Kbp
        2.9Mbp
        105.0
        373.55
        22.03
        2444
        73
        92.9%
        16SBCL942_scaffold_closed
        2625.0Kbp
        2625.0Kbp
        0.0K
        1.0K
        2625.0Kbp
        2.9Mbp
        101.0
        383.93
        22.54
        2434
        70
        92.8%
        16SBCL943_scaffold_closed
        1994.5Kbp
        383.3Kbp
        0.0K
        2.0K
        1994.5Kbp
        2.9Mbp
        84.0
        385.78
        22.93
        2446
        47
        92.7%
        16SBCL944_scaffold_closed
        2486.0Kbp
        2486.0Kbp
        0.0K
        1.0K
        2486.0Kbp
        2.9Mbp
        82.0
        383.01
        23.11
        2441
        52
        92.6%
        16SBCL945_scaffold_closed
        2795.3Kbp
        2795.3Kbp
        0.0K
        1.0K
        2795.3Kbp
        2.9Mbp
        91.0
        377.77
        21.83
        2448
        44
        92.7%
        17SBCL1132_scaffold_closed
        3263.8Kbp
        3263.8Kbp
        0.0K
        1.0K
        3263.8Kbp
        3.3Mbp
        44.0
        811.65
        39.38
        2715
        37
        91.9%
        17SBCL1133_scaffold_closed
        3240.3Kbp
        3240.3Kbp
        0.0K
        1.0K
        3240.3Kbp
        3.7Mbp
        64.0
        959.67
        47.49
        2662
        71
        90.6%
        17SBCL1134_scaffold_closed
        3161.9Kbp
        3161.9Kbp
        0.0K
        1.0K
        3161.9Kbp
        3.3Mbp
        97.0
        1183.24
        60.80
        2566
        50
        85.7%
        17SBCL1136_scaffold_closed
        2377.3Kbp
        2377.3Kbp
        0.0K
        1.0K
        2377.3Kbp
        2.9Mbp
        69.0
        65.14
        6.11
        2538
        43
        96.0%
        17SBCL1137_scaffold_closed
        1662.1Kbp
        188.2Kbp
        0.0K
        4.0K
        1662.1Kbp
        3.0Mbp
        128.0
        386.38
        24.29
        2368
        118
        91.9%
        17SBCL19_scaffold_closed
        2880.0Kbp
        2880.0Kbp
        0.0K
        1.0K
        2880.0Kbp
        2.9Mbp
        108.0
        447.46
        23.15
        2371
        56
        90.3%
        17SBCL20_scaffold_closed
        2886.4Kbp
        2886.4Kbp
        0.0K
        1.0K
        2886.4Kbp
        2.9Mbp
        115.0
        446.73
        23.89
        2368
        71
        90.4%
        17SBCL21_scaffold_closed
        2810.3Kbp
        2810.3Kbp
        0.0K
        1.0K
        2810.3Kbp
        2.9Mbp
        111.0
        447.15
        24.22
        2364
        73
        90.2%
        17SBCL22_scaffold_closed
        2885.0Kbp
        2885.0Kbp
        0.0K
        1.0K
        2885.0Kbp
        2.9Mbp
        107.0
        451.07
        24.36
        2369
        73
        90.4%
        17SBCL23_scaffold_closed
        2730.5Kbp
        2730.5Kbp
        0.0K
        1.0K
        2730.5Kbp
        2.9Mbp
        92.0
        447.37
        23.88
        2365
        73
        90.3%
        17SBCL335_scaffold_closed
        3322.5Kbp
        3322.5Kbp
        0.0K
        1.0K
        3322.5Kbp
        3.3Mbp
        62.0
        1152.71
        52.70
        2697
        33
        90.6%
        17SBCL336_scaffold_closed
        3322.1Kbp
        3322.1Kbp
        0.0K
        1.0K
        3322.1Kbp
        3.3Mbp
        60.0
        1174.32
        52.77
        2697
        34
        90.5%
        17SBCL337_scaffold_closed
        3321.8Kbp
        3321.8Kbp
        0.0K
        1.0K
        3321.8Kbp
        3.3Mbp
        64.0
        1176.21
        53.35
        2695
        34
        90.5%
        17SBCL338_scaffold_closed
        3317.4Kbp
        3317.4Kbp
        0.0K
        1.0K
        3317.4Kbp
        3.3Mbp
        58.0
        1173.72
        53.40
        2691
        35
        90.5%
        17SBCL339_scaffold_closed
        3228.2Kbp
        3228.2Kbp
        0.0K
        1.0K
        3228.2Kbp
        3.3Mbp
        58.0
        1173.36
        53.10
        2693
        36
        90.6%
        17SBCL67_scaffold_closed
        3188.5Kbp
        3188.5Kbp
        0.0K
        1.0K
        3188.5Kbp
        3.3Mbp
        53.0
        818.78
        39.82
        2667
        49
        90.0%
        17SBCL767_scaffold_closed
        3277.4Kbp
        3277.4Kbp
        0.0K
        1.0K
        3277.4Kbp
        3.5Mbp
        64.0
        937.41
        47.93
        2598
        51
        87.9%
        17SBCL768_scaffold_closed
        3203.2Kbp
        3203.2Kbp
        0.0K
        1.0K
        3203.2Kbp
        3.5Mbp
        101.0
        1141.80
        57.06
        2590
        49
        87.0%
        17SBCL79_scaffold_closed
        3229.4Kbp
        3229.4Kbp
        0.0K
        1.0K
        3229.4Kbp
        3.4Mbp
        52.0
        717.02
        34.52
        2737
        30
        92.1%
        17SBCL80_scaffold_closed
        3141.8Kbp
        3141.8Kbp
        0.0K
        1.0K
        3141.8Kbp
        3.4Mbp
        52.0
        712.02
        34.09
        2739
        34
        92.0%
        17SBCL81_scaffold_closed
        3454.3Kbp
        3454.3Kbp
        0.0K
        1.0K
        3454.3Kbp
        3.6Mbp
        56.0
        722.03
        34.06
        2735
        31
        92.0%
        17SBCL82_scaffold_closed
        3227.9Kbp
        3227.9Kbp
        0.0K
        1.0K
        3227.9Kbp
        3.4Mbp
        52.0
        717.81
        34.24
        2733
        34
        92.0%
        17SBCL83_scaffold_closed
        2766.4Kbp
        2766.4Kbp
        0.0K
        1.0K
        2766.4Kbp
        3.5Mbp
        56.0
        720.13
        34.23
        2738
        33
        92.1%
        17SBCL85_scaffold_closed
        3230.8Kbp
        3230.8Kbp
        0.0K
        1.0K
        3230.8Kbp
        3.4Mbp
        52.0
        708.10
        34.25
        2742
        33
        92.1%
        17SBCL86_scaffold_closed
        3228.8Kbp
        3228.8Kbp
        0.0K
        1.0K
        3228.8Kbp
        3.4Mbp
        53.0
        714.31
        34.19
        2739
        32
        92.1%
        17SBCL87_scaffold_closed
        3228.7Kbp
        3228.7Kbp
        0.0K
        1.0K
        3228.7Kbp
        3.4Mbp
        52.0
        720.27
        34.33
        2736
        34
        92.0%
        17SBCL88_scaffold_closed
        3228.0Kbp
        3228.0Kbp
        0.0K
        1.0K
        3228.0Kbp
        3.4Mbp
        53.0
        710.66
        33.89
        2740
        31
        92.0%
        17SBSCL512_scaffold_closed
        2322.3Kbp
        2322.3Kbp
        0.0K
        1.0K
        2322.3Kbp
        2.9Mbp
        63.0
        175.14
        12.85
        2508
        45
        95.0%
        17SBSCL513_scaffold_closed
        2482.5Kbp
        2482.5Kbp
        0.0K
        1.0K
        2482.5Kbp
        2.9Mbp
        69.0
        172.07
        13.25
        2500
        56
        95.1%
        17SBSCL738_scaffold_closed
        2742.6Kbp
        2742.6Kbp
        0.0K
        1.0K
        2742.6Kbp
        2.9Mbp
        150.0
        986.32
        52.60
        2296
        60
        88.4%
        17SBSCL739_scaffold_closed
        2654.7Kbp
        2654.7Kbp
        0.0K
        1.0K
        2654.7Kbp
        2.9Mbp
        141.0
        989.23
        52.89
        2298
        65
        88.4%
        18SBCL173_scaffold_closed
        2735.2Kbp
        2735.2Kbp
        0.0K
        1.0K
        2735.2Kbp
        2.9Mbp
        99.0
        433.74
        24.39
        2456
        67
        93.2%

        Number of Contigs

        This plot shows the number of contigs found for each assembly, broken down by length.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Bowtie 2

        Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences.

        This plot shows the number of reads aligning to the reference in different ways.

        There are 3 possible types of alignment: SE Mapped uniquely: Read has only one occurence in the reference genome. SE Multimapped: Read has multiple occurence. * SE No aligned: Read has no occurence.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Trimmomatic

        Trimmomatic is a flexible read trimming tool for Illumina NGS data.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        FastQC

        FastQC is a quality control tool for high throughput sequence data, written by Simon Andrews at the Babraham Institute in Cambridge.

        Sequence Quality Histograms

        The mean quality value across each base position in the read. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Per Sequence Quality Scores

        The number of reads with average quality scores. Shows if a subset of reads has poor quality. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Per Base Sequence Content

        The proportion of each base position for which each of the four normal DNA bases has been called. See the FastQC help.

        Click a sample row to see a line plot for that dataset.
        Rollover for sample name
        Position: -
        %T: -
        %C: -
        %A: -
        %G: -

        Per Sequence GC Content

        The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Per Base N Content

        The percentage of base calls at each position for which an N was called. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Sequence Length Distribution

        All samples have sequences of a single length (151bp).

        Sequence Duplication Levels

        The relative level of duplication found for every sequence. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Overrepresented sequences

        The total amount of overrepresented sequences found in each library. See the FastQC help for further information.

        298 samples had less than 1% of reads made up of overrepresented sequences

        Adapter Content

        The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. See the FastQC help. Only samples with ≥ 0.1% adapter contamination are shown.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).